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Figtree is a program for viewing trees, including summary information produced by treeannotator, and producing publication quality figures. Beast considers the present or most recent sampling time as time 0). Installing beast beast has been developed in java, which allows the same code to run on any platform that has the java software installed
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Running beast for the first time this tutorial will guide you through running beast and some of its accessory programs to do a simple phylogenetic analysis The sequences are assumed to be sampled at the same time If you haven’t already, download and install beast following these instructions.
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To summarise bayes factor support for rates, select the discrete rates tab It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology To inform beauti/beast about the sampling dates of the sequences, go to the tips menu and select the “use tip dates” option By default all the taxa are assumed to have a date of zero (i.e
